Hua-Sheng Chiu

Hua-Sheng Chiu, Ph.D.

Assistant Professor

Email

hchiu@bcm.edu

Positions

Assistant Professor: Pediatrics-Oncology
Texas Children's Hospital, ��Ƶ of Medicine
Houston, Texas, United States

Addresses

Texas Children's Hospital - Feigin Center (Office): 1102 Bates Avenue
Room: TXFC-C1220.10
Houston, TX, 77030
United States

Education

PhD from Columbia University in the City of New York: 12/2013 - New York, New York, United States; Department of Biomedical Informatics - Bioinformatics track

MPH from Columbia University in the City of New York: 06/2012 - New York, New York, United States; Department of Biomedical Informatics - Bioinformatics track

MA from Columbia University in the City of New York: 10/2011 - New York, New York, United States; Department of Biomedical Informatics - Bioinformatics track

Honors & Awards

Young Investigator Travel Fellowship Award: Symposia on Cancer Research: Genomic Medicine (10/2013)

Travel Fellowship Award: The RNA Society (05/2015)

Honorary Member: The Phi Tau Phi Scholastic Honor Society

Cancers 2020 Outstanding Reviewer Awards: MDPI (Multidisciplinary Digital Publishing Institute) (01/2020 - 12/2020)

Editorial Review Board: SAGE Journals: Technology in Cancer Research & Treatment (TCRT) (12/2021)

Editorial Review Board: MDPI Journals: Cancers (06/2020)

Editorial Review Board: MDPI Journals: Microorganisms (12/2020)

Editorial Review Board: MDPI Journals: Non-Coding RNA (01/2021)

Graduate Student Fellowship: Columbia University in the City of New York (09/2009 - 08/2010)

Best Master’s Thesis Award: Taiwan Association for Artificial Intelligence

Studying Abroad Scholarship: Ministry of Education, Taiwan (09/2009 - 08/2011)

Undergraduate Graduation with Distinction (1%): National Central University

Professional Interests

MicroRNA
Long noncoding RNA
Competing endogenous RNA (ceRNA)
Computational systems biology of cancer
Integrative genomics
Machine learning
Data science

Websites

Prediction of ceRNA interactions

Simultaneous prediction of miRNA-targets and ceRNAs

Prediction of regulation by lncRNA including decoy, cofactor, guide, and switch

Professional Development

Keystone Symposia: MicroRNAs and Noncoding RNAs in Cancer: Conference (Participant, 2015)

RNA 2015: Conference (Participant, 2015)

Cell Symposia: Regulatory RNAs: Conference (Presenter, 2011)

Symposia on Cancer Research: ncRNA in Disease and Cancer: Conference (Participant, 2014)

American Society of Human Genetics: Conference (Participant, 2013)

Symposia on Cancer Research: Genomic Medicine: Conference (Participant, 2013)

Boston Taiwanese Biotechnology Symposium: Conference (Presenter, 2013)

Cold Spring Harbor Laboratory Meeting on Systems Biology: Networks: Conference (Participant, 2013)

The Cancer Genome Atlas (TCGA) 1st Annual Scientific Symposium: Conference (Participant, 2011)

International Conference on Research in Computational Molecular Biology (RECOMB): Conference (Participant, 2004)

RECOMB Satellite Joint Conference on Systems Biology and Regulatory Genomics: Conference (Participant, 2010)

IEEE International Conference on Bioinformatics and Bioengineering (BIBE): Conference (Participant, 2009)

Asia Pacific Bioinformatics Conference: Conference (Participant, 2006)

Selected Publications

Chiu HS *, Somvanshi S *, et al. " " Cell Reports. 2018 Apr 3; 23 (1) : 297-312.
Pubmed PMID: .
Chiu HS *, Llobet-Navas D *, et al. " " Genome Research. 2015 Feb 10; 25 (2) : 257-67.
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Sumazin P *, Yang X *, Chiu HS *, et al. " " Cell. 2011 Oct 14; 147 (2) : 370-381.
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Chiu HS et al. " " BMC Genomics. 2017 May 30; 18 (1) : 418.
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Lo A, Chiu HS, et al. " " Journal of Proteome Research. 2007 Dec 15; 7 (2) : 487-96.
Pubmed PMID: .
Su EC, Chiu HS, et al. " " BMC Bioinformatics. 2007 Sep 8; 8 (330)
Pubmed PMID: .
Chang JM, Su EC, Lo A, Chiu HS, et al. " " Proteins: Structure, Function, and Bioinfo. 2008 Aug ; 72 (2) : 693-710.
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Campbell JD, Yau C, Bowlby R, ..., Chiu HS, ..., Pickering CR, Chen Z, and Waes CV. " " Cell Reports. 2018 Apr 3; 23 (1) : 194-212.
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Berger AC, Korkut A, Kanchi RS, ..., Chiu HS, ..., Mills GB, Levine DA, and Akbani R. " " Cancer Cell. 2018 Apr 2;
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Chiu HS *, Martínez MR *, et al. " " Nucleic Acids Res. 2018 May 18; 46 (9) : 4354–4369.
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Ustianenko D *, Chiu HS *, Treiber T *, et al. " " Mol Cell. 2018 Jul 19; 71 (2) : 271–283.e5.
Pubmed PMID: .
Lorenzi L *, Chiu HS *, Avila Cobos F, Gross S, Volders PJ, Cannoodt R, Nuytens J, Vanderheyden K, Anckaert J, Lefever S, ..., Wilkins MR, Unnikrishnan A, De Preter K, Kjems J, Koster J, Schroth GP, Vandesompele J, Sumazin P, Mestdagh P. " " Nat Biotechnol. 2021 Nov 9; 39 (11) : 1453–1465.
Pubmed PMID: .

Memberships

The RNA Society: Member (01/2015 - 12/2015)

The American Society of Human Genetics (ASHG): Member (10/2013 - 10/2014)

American Association for the Advancement of Science (AAAS): Member (02/2012 - 01/2014)

Taiwan Association for Artificial Intelligence (TAAI): The Lifetime Membership (09/2004)

Skills

Programming language: C/C++, MATLAB, R

Molecular Biology: Cell Culture, Western Blot, qRT-PCR, Proliferation Assay, Migration Assay

Analysis of large-scale data, e.g., RNA-Seq or small RNA-Seq

Languages

Chinese (Mandarin), Chinese (Min)

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